Mississippi State University · Biological Sciences

Studying diversification using genomic data.

Our research focuses on developing methods for analyzing genomic data in an evolutionary context, and applies these methods to the study of terrestrial mollusks. We evaluate existing methods and develop novel methods (including machine learning methods) for analyzing genomic data to answer questions about species diversification. We combine field, lab, and computational work to study diversification in terrestrial snails and slugs.

Close-up of a cute snail
01 — News from the lab

News

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02 — The science

Research

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I

Invasive Terrestrial Gastropods

We combine genetic, phenotypic, and ecological data to investigate the invasive histories and the factors promoting invasiveness in terrestrial snails and slugs.

II

Machine Learning in Population Genetics

We develop and test machine-learning approaches — including domain adaptation — for inferring evolutionary histories from genomic data.

III

Gene Duplication

We use gene duplicates to improve phylogenetic inference and develop methods for investigating the evolutionary dynamics, causes, and consequences of gene duplication and loss.

IV

Speciation in Native Slugs

We study species limits and speciation in native terrestrial gastropods from North America.

03 — The humans

People

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We are hiring a postdoc and recruiting Ph.D. students and undergraduates. Interested in genomics, computational evolutionary biology, or malacology? Get in touch.
04 — Open-source tools

Software

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In development

popai

A Python package for demographic model selection using machine learning.

GAN-based inference

phyloGAN

Infers phylogenetic relationships using a Generative Adversarial Network.

Simulation

dupcoal

Simulates gene trees under duplication, loss, and coalescence, including copy-number hemiplasy.